Index

A

aes() (in module pymerlin.iq)

arg_check_h5() (in module pymerlin.dataIO) arg_check_nii() (in module pymerlin.dataIO)

C

calc_H() (in module pymerlin.moco)

check_filename() (in module pymerlin.dataIO) create_image() (in module pymerlin.dataIO)

F

fibonacci() (in module pymerlin.utils)

G

get_versor_factors() (in module pymerlin.reg)

gradient_entropy() (in module pymerlin.iq)

H

histogram_threshold_estimator() (in module pymerlin.reg)

I

imshow3() (in module pymerlin.plot)

L

linear_phyllotaxis() (in module pymerlin.trajectory)

M

make_3D() (in module pymerlin.dataIO) make_tukey() (in module pymerlin.utils) moco_single() (in module pymerlin.moco) moco_sw() (in module pymerlin.moco) module pymerlin.dataIO pymerlin.iq pymerlin.main_pymerlin pymerlin.main_tools.h52nii pymerlin.main_tools.h5viewer pymerlin.main_tools.nii2h5 pymerlin.moco pymerlin.plot pymerlin.reg pymerlin.trajectory pymerlin.utils

N

nrmse() (in module pymerlin.iq)

O

otsu_filter() (in module pymerlin.reg)

P

parse_combreg() (in module pymerlin.utils) parse_fname() (in module pymerlin.dataIO) piccini_phyllotaxis() (in module pymerlin.trajectory) plot_3plane() (in module pymerlin.plot) pymerlin.dataIO module pymerlin.iq module pymerlin.main_pymerlin module pymerlin.main_tools.h52nii module pymerlin.main_tools.h5viewer module

pymerlin.main_tools.nii2h5 module pymerlin.moco module pymerlin.plot module pymerlin.reg module pymerlin.trajectory module pymerlin.utils module

R

read_image_h5() (in module pymerlin.dataIO) read_ismrmrd() (in module pymerlin.dataIO) read_radial_h5() (in module pymerlin.dataIO) reg_animation() (in module pymerlin.plot)

report_plot() (in module pymerlin.plot) resample_image() (in module pymerlin.reg) rotmat() (in module pymerlin.utils) rotmat_versor() (in module pymerlin.utils)

S

setup_optimizer() (in module pymerlin.reg)

ssim() (in module pymerlin.iq) swinbank_phyllotaxis() (in module pymerlin.trajectory)

T

threshold_image() (in module pymerlin.reg)

timeseries_video() (in module pymerlin.plot) traj2points() (in module pymerlin.trajectory)

V

versor3D_registration() (in module pymerlin.reg) versor_reg_summary() (in module pymerlin.reg)

versor_resample() (in module pymerlin.reg) versor_to_euler() (in module pymerlin.utils) versor_watcher() (in module pymerlin.reg)

W

winsorize_image() (in module pymerlin.reg)

wong_roos_interleaved_traj() (in module pymerlin.trajectory) wong_roos_traj() (in module pymerlin.trajectory)